Omics intelligence, on autopilot

Your sequencing data flows in.
Analysis comes out.
No bioinformatician needed.

HelixFlow is an autonomous AI agent that runs your entire omics pipeline — from raw reads to publication-ready results — while your lab team focuses on science.

How it works
Upload
Raw .fastq or .bam files land in your lab folder
HelixFlow Agent
Quality filters, alignment, normalization, differential analysis
Results delivered
Tables, heatmaps, pathway reports — in your inbox

Full reproducibility: every run logged, versioned, and traceable.

Built for lab operators

Autonomous execution

Trigger a run and walk away. HelixFlow monitors the queue, handles failures, retries, and delivers results without a human in the loop.

Multi-omics coverage

Proteomics, transcriptomics, epigenomics — one agent, any data type. No stitching together separate tools.

Lab-grade provenance

Every result is traceable to its source data and pipeline version. Reproducible science, audit-ready.

Always learning

Agent improves with every run. Your specific lab's protocols, cell lines, and reference genomes become part of its context.

The shift

From weeks to hours.
From specialist to autonomous.

3 hrs
average time from raw data upload to delivery, including QC, alignment, and differential analysis
1
human operator required — just the lab tech who uploads the files. No bioinformatician on staff needed.
100%
reproducible. Every analysis versioned and linked to the source data. No more "which pipeline version did I use?"

The bottleneck in omics was never the sequencer. It was the person at the keyboard. We fixed that.